| # | Team | P | W | Points |
|---|---|---|---|---|
| 1 | Red Bull Salzburg | 6 | 6 | 18 |
| 2 | Werder Bremen | 6 | 5 | 16 |
| 3 | Benfica | 6 | 5 | 15 |
| 4 | Fenerbahçe | 6 | 5 | 15 |
| 5 | PSV Eindhoven | 6 | 4 | 14 |
| 6 | Shakhtar Donetsk | 6 | 4 | 13 |
| 7 | Galatasaray | 6 | 4 | 13 |
| 8 | Roma | 6 | 4 | 13 |
| 9 | Hapoel Tel Aviv | 6 | 4 | 12 |
| 10 | Valencia | 6 | 3 | 12 |
| 11 | Panathinaikos | 6 | 4 | 12 |
| 12 | Anderlecht | 6 | 3 | 11 |
| 13 | Club Brugge | 6 | 3 | 11 |
| 14 | Ajax | 6 | 3 | 11 |
| 15 | SCP | 6 | 3 | 11 |
| 16 | Fulham | 6 | 3 | 11 |
| 17 | LOSC | 6 | 3 | 10 |
| 18 | Copenhagen | 6 | 3 | 10 |
| 19 | Ath Bilbao | 6 | 3 | 10 |
| 20 | Hamburger | 6 | 3 | 10 |
| 21 | Hertha Berlin | 6 | 3 | 10 |
| 22 | Basel 1893 | 6 | 3 | 9 |
| 23 | Villarreal | 6 | 3 | 9 |
| 24 | Everton | 6 | 3 | 9 |
| 25 | Heerenveen | 6 | 2 | 8 |
| 26 | Twente Enschede | 6 | 2 | 8 |
| 27 | Genoa | 6 | 2 | 7 |
| 28 | Sparta | 6 | 2 | 7 |
| 29 | BATE Borisov | 6 | 2 | 7 |
| 30 | Toulouse | 6 | 2 | 7 |
| 31 | Celtic | 6 | 1 | 6 |
| 32 | Lazio | 6 | 2 | 6 |
| 33 | Dinamo Zagreb | 6 | 2 | 6 |
| 34 | Dinamo 1948 | 6 | 2 | 6 |
| 35 | Nacional da Madeira | 6 | 1 | 5 |
| 36 | Sheriff Tiraspol | 6 | 1 | 5 |
| 37 | Politehnica Timisoara | 6 | 1 | 5 |
| 38 | Rapid Wien | 6 | 1 | 5 |
| 39 | Sturm Graz | 6 | 1 | 4 |
| 40 | FCSB | 6 | 0 | 4 |
| 41 | AEK Athens | 6 | 1 | 4 |
| 42 | CFR Cluj | 6 | 1 | 3 |
| 43 | JFK Ventspils | 6 | 0 | 3 |
| 44 | Partizan Belgrade | 6 | 1 | 3 |
| 45 | Slavia | 6 | 0 | 3 |
| 46 | Levski Sofia | 6 | 1 | 3 |
| 47 | Austria Vienna | 6 | 0 | 2 |
| 48 | CSKA Sofia | 6 | 0 | 1 |
